afni.nimh.nih.gov

Hi Jun,

It might be useful to run 3dinfo on each and look at the extents. Feel free to post that.

But without knowing, it might be just as safe to align everything to whichever standard space template you are using. That would mean running @Align_Centers on each dataset (EPI and anat), using -base TEMPLATE+tlrc, for whichever template you are using.

Does that seem reasonable?

- rick