Hi all! I am getting this error when trying to install afni. Do you have any suggestions? Thank you
========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate from 'tcsh'
* shell bash: consider sourcing (non-login) .bashrc from (login) .bash_profile
* missing R packages (see rPkgsInstall)
forsales-Air:~ forsale$ afni_system_check.py -check_all > out.afni_system_check.txt
forsales-Air:~ forsale$
forsales-Air:~ forsale$
forsales-Air:~ forsale$ afni
Precompiled binary macos_10.12_local: Sep 12 2018 (Version AFNI_18.2.16)
Thanks go to N Vanello for much encouragement
Initializing: X11
++ If you are using XQuartz 2.7.10 (or later), and AFNI crashes when
+ opening windows, or you cannot type text into AFNI popup windows,
+ you might need to set an environment variable to solve this problem:
+ setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace
+ This command is best put in your startup ~/.cshrc file, so that
+ it will be invoked for every (t)csh shell you open.
++ AFNI is detached from terminal.
forsales-Air:~ forsale$ suma[The X.Org Foundation v 11804000].
Fatal Signal 11 (SIGSEGV) received
ISQ_record_button
open_MCW_imseq
SPLASH_popup_image
AFNI_splashup
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_18.2.16 Compile date = Sep 12 2018
** [[Precompiled binary macos_10.12_local: Sep 12 2018]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/forsale/.afni.crashlog
DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace
-bash: sumaDYLD_LIBRARY_PATH: command not found
forsales-Air:~ forsale$ rPkgsInstall -pkgs ALL
oo Warning:
Failed to load R_io.so with this error message:
Error in dyn.load(ll) :
unable to load shared object '/Users/forsale/abin/R_io.so':
dlopen(/Users/forsale/abin/R_io.so, 6): Library not loaded: /sw/lib/libjpeg.9.dylib
Referenced from: /Users/forsale/abin/R_io.so
Reason: image not found
Calls: source ... withVisible -> eval -> eval -> set_R_io -> dyn.load
Execution halted
forsales-Air:~ forsale$ sudo rPkgsInstall -pkgs ALL
Password:
oo Warning:
Failed to load R_io.so with this error message:
Error in dyn.load(ll) :
unable to load shared object '/Users/forsale/abin/R_io.so':
dlopen(/Users/forsale/abin/R_io.so, 6): Library not loaded: /sw/lib/libjpeg.9.dylib
Referenced from: /Users/forsale/abin/R_io.so
Reason: image not found
Calls: source ... withVisible -> eval -> eval -> set_R_io -> dyn.load
Execution halted
forsales-Air:~ forsale$
