I re-ran everything where I requested one core (job), 20gb of virtual memory, and a wall time of 2 hours. I was able to get the output from the -x1D, -x1D_uncensored, -cbucket, and -bucket commands, but not the -errts output due to this error:

Fatal Signal 15 (SIGTERM) received
Last STATUS: convert to p-value
mri_fdrize
mri_fdr_curve
THD_create_one_fdrcurve
THD_create_all_fdrcurves
3dDeconvolve main
Bottom of Debug Stack
** Command line was:
3dDeconvolve -input /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/sub-002_task-std_bold_space-MNI152NLin2009cAsym_preproc_smooth_scale_all.nii.gz -polort A -jobs 1 -ortvec /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/sub-002_task-std_bold_confounds_noheader_all.1D -local_times -concat '1D: 0 870 1740 2610 3480 4350 5220 6090' -num_stimts 2 -stim_times_AM1 1 /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/derivatives/Timing_Files/DM/mut.txt 'dmBLOCK(1)' -stim_label 1 mut -stim_times_AM1 2 /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/derivatives/Timing_Files/DM/neu.txt 'dmBLOCK(1)' -stim_label 2 neu -num_glt 1 -gltsym 'SYM: mut -neu' -glt_label 1 M-N -fout -tout -x1D /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/zsub-002.xmat.1D -x1D_uncensored /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/zsub-002.uncensor.xmat.1D -errts /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/zsub-002_errts -cbucket /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/zsub-002_Decon_betas.nii.gz -bucket /N/dc2/scratch/dlevitas/fMRI_data/std/002_noica/fmriprep/sub-002/func/zsub-002_Decon.nii.gz
** AFNI version = AFNI_18.0.12 Compile date = Feb 5 2018
** [[Precompiled binary linux_openmp_64: Feb 5 2018]]
** Program Death **


I assume this was because I ran out of wall time, therefore the job aborted prematurely. I'll try again and request more time for processing.

Moving forward, I'll probably want to try 3dMEMA, which suggests using 3dREMLfit instead, so if I pursue that route, would incorporating the -x1D_stop option reduce the amount of processing in 3dDeconvolve since it's only generating the matrix file?