History of AFNI updates  

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October 15, 2018 10:13AM
Hi Dan,

The impression that I had (though was not sure about,
and so mentioned it as an assumption) was that you ran
FreeSurfer on standard space anatomical volumes.

Since that is not true, and you are running FS on orig
data, then it is preferable to no run AlignToExperiment
using standard space data. It is not horrible if the
alignment is affine, but non-linear cannot be done.


It seems to me then there is no reason to go to standard
space. Consider following the class analysis example
that starts with orig space surfaces.

There is an afni_proc.py command: AFNI_data6/FT_analysis/s03.ap.surface
and the corresponding proc script: AFNI_data6/FT_analysis/s13.proc.FT.surf

@SUMA_AlignToExperiment is run in there.

- rick
Subject Author Posted

Running into 3dVol2Surf Error

Dan October 09, 2018 01:29PM

Re: Running into 3dVol2Surf Error

rick reynolds October 09, 2018 04:43PM

Re: Running into 3dVol2Surf Error

Dan October 10, 2018 09:34AM

Re: Running into 3dVol2Surf Error

rick reynolds October 11, 2018 09:52AM

Re: Running into 3dVol2Surf Error

Dan October 11, 2018 10:34AM

Re: Running into 3dVol2Surf Error

rick reynolds October 15, 2018 10:13AM

Re: Running into 3dVol2Surf Error

EXP.2086 December 14, 2018 07:07AM

Re: Running into 3dVol2Surf Error

rick reynolds December 14, 2018 09:46AM