-------------------------------- general ---------------------------------
architecture:         64bit ELF
system:               Linux
release:              3.13.0-37-generic
version:              #64-Ubuntu SMP Mon Sep 22 21:28:38 UTC 2014
distribution:         LinuxMint 17.1 rebecca
number of CPUs:       8
apparent login shell: tcsh
shell RC file:        .cshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /home/galit/abin/afni
afni version         : Precompiled binary linux_openmp_64: Oct 12 2018 
                     : AFNI_18.3.01
AFNI_version.txt     : AFNI_18.3.01, linux_openmp_64, Oct 12 2018
which python         : /usr/bin/python
python version       : 2.7.6
which R              : /usr/bin/R
R version            : R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
which tcsh           : /usr/bin/tcsh

instances of various programs found in PATH:
    afni    : 1   (/home/galit/abin/afni)
    R       : 1   (/usr/bin/R)
    python  : 1   (/usr/bin/python2.7)
    python2 : 1   (/usr/bin/python2.7)
    python3 : 1   (/usr/bin/python3.4)


testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : FAILURE
        3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : FAILURE
        3dRSFC: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
    SurfMesh             : success
    3dClustSim           : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : FAILURE
        
        oo Warning: 
           These packages are not installed on the computer: afex!
        These packages are not installed on the computer: phia!
        These packages are not installed on the computer: snow!
        These packages are not installed on the computer: nlme!
        These packages are not installed on the computer: lme4!
        These packages are not installed on the computer: paran!
        These packages are not installed on the computer: psych!
        These packages are not installed on the computer: brms!
        

checking for $HOME files...
    .afnirc                   : found
    .sumarc                   : missing
    .afni/help/all_progs.COMP : missing

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib/python2.7/dist-packages/PyQt4
++ module loaded: PyQt4

-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/galit/abin

PYTHONPATH = 
R_LIBS = /home/galit/R

LD_LIBRARY_PATH = 
DYLD_LIBRARY_PATH = 
DYLD_FALLBACK_LIBRARY_PATH = 

------------------------------ data checks -------------------------------
data dir : found AFNI_data6   under $HOME
           top history: ... Jun 2018 [gangc]: added 0.BGA and updated 2.3groups
data dir : found AFNI_demos   under $HOME
           top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : found suma_demo    under $HOME
           top history: .../SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found afni_handouts under $HOME
atlas    : found TT_N27+tlrc  under /home/galit/abin

------------------------------ OS specific -------------------------------
which apt-get        : /usr/bin/apt-get
apt-get version      : apt 1.0.1ubuntu2 for amd64 compiled on Oct 28 2014 20:55:14


=========================  summary, please fix:  =========================
*  AFNI programs show FAILURE
*  missing R packages (see rPkgsInstall)
*  consider running "suma -update_env" for .sumarc
*  consider running: apsearch -update_all_afni_help