AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 11, 2020 03:33PM
Hi-

A couple things.

I think that Mac OS version 10.12 should still be OK to use.

The main issue is that you need to set an environment variable noted in the last section of your afni_system_check.py output (this is necessary for Macs). Could you please copy past the following in a terminal:
echo "" >> ~/.bashrc
echo "export DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}:/opt/X11/lib/flat_namespace" >> ~/.bashrc

echo "" >> ~/.cshrc
echo "setenv DYLD_LIBRARY_PATH /opt/X11/lib/flat_namespace" >> ~/.cshrc

That should set the variable in both your bash and tcsh shells. If you open up a new terminal, you should be able to run the @SUMA_Make_Spec_FS program. (I think probably at the moment even opening the "suma" and "afni" GUIs is probably broken on your computer, without this variable being set?)

Second, the afni_system_check.py output reports that 3dMVM fails because your R version is too old -- there is a link to the currently recommended R version number here:
[afni.nimh.nih.gov]
... and subsequent libraries that will have to be installed (the second part is slow, because of the compilation process by R, unfortunately).

--pt
Subject Author Posted

Error using @SUMA_Make_Spec_FS

swallowwly October 11, 2018 09:57AM

Re: Error using @SUMA_Make_Spec_FS

ptaylor October 11, 2018 10:01AM

Re: Error using @SUMA_Make_Spec_FS

swallowwly October 11, 2018 11:22AM

Re: Error using @SUMA_Make_Spec_FS

ptaylor October 11, 2018 03:10PM

Re: Error using @SUMA_Make_Spec_FS

swallowwly October 11, 2018 03:51PM

Re: Error using @SUMA_Make_Spec_FS

SarahChang August 11, 2020 04:29AM

Re: Error using @SUMA_Make_Spec_FS

SarahChang August 11, 2020 04:56AM

Re: Error using @SUMA_Make_Spec_FS

ptaylor August 11, 2020 03:33PM

Re: Error using @SUMA_Make_Spec_FS

rick reynolds August 11, 2020 06:00PM

Re: Error using @SUMA_Make_Spec_FS

SarahChang August 13, 2020 04:11AM

Re: Error using @SUMA_Make_Spec_FS

rick reynolds August 13, 2020 09:12AM