AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 14, 2018 10:29PM
Hello, i was wondering if it makes sense to regress out the "noise component" time series from an FSL melodic spatial ICA decomposition (ie, the file created by melodic called "melodic_mix") using 3dTproject. this file contains a time series associated to each spatial ICA component. i would like to regress out some of the melodic ICA components.

typically, i use the fsl command (fsl_regfilt) for subtracting components from the BOLD signal, but i would also like to remove the global signal and do bandpass filtering in the same step, using 3dTproject (i learned recently that it was not mathematically correct to regress out these components sequentially). i'm aware that it's not good practice to combine different software packages in a single analysis pipeline, but fsl_regfilt doesn't allow for bandpass filtering in a single step, whereas 3dTproject does.

if anyone here has experience with fsl's melodic, do you think what i am proposing sounds correct? thank you,

Russell
Subject Author Posted

regression out melodic time series and global signal using 3dTproject?

russell_butler October 14, 2018 10:29PM

Re: regression out melodic time series and global signal using 3dTproject?

russell_butler October 17, 2018 12:34PM

Re: regression out melodic time series and global signal using 3dTproject?

rick reynolds October 21, 2018 08:37PM