AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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lzhyoung
November 14, 2018 12:42AM
Hi all,

I found that it is returns nothing if I using the command "whereami" to get anatomical label if my dataset is in MNI space.
The "Where am I" in the right-click recipe works very well.
However, I want to get a summary of the proportion of the overlap of the whole cluster with the brain atlas, not a single coordinate.

Thanks very much!
-Lz


The below is an example command and output.

whereami -omask cluster1.nii

++ Input coordinates orientation set by default rules to LPI
++ In ordered mode ...
++ Have 2 unique values of:
0 1
++ Skipping unique value of 0
++ ========================================================================
++ Processing unique value of 1
++ 781 voxels in ROI
++ 2631 voxels in atlas-resampled mask
Intersection of ROI (valued 1) with atlas MNI_VmPFC (sb0):
-----
0.0 % of cluster accounted for.
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Subject Author Posted

Using whereami to get antomical label of activated clusters

lzhyoung November 14, 2018 12:42AM

Re: Using whereami to get antomical label of activated clusters

lzhyoung November 15, 2018 08:48PM