Dear expert,
I am running @SSWarper on a new machine to get the transformation from the T1 subject space to the MNI. Here the command that I am running:
@SSwarper -input T1.nii -base MNI152_2009_template_SSW.nii.gz -subid sub006
I get the following error right after the first pass of skull stripping:
* ERROR: Totally bogus option '-awarp'
Here's hoping these excerpts from '3dQwarp -help' enlighten:
'-plusminus = Normally, the warp displacements dis(x) are defined to match'
'-ballopt = Normally, the incremental warp parameters are optimized inside'
'-noXdis = These options let you specify that the warp should not'
++ no -frac option: defaulting to -union
++ processing 1 input datasets...
++ padding all datasets by 1 (for dilations)
++ frac 0 over 1 volumes gives min count 0
++ voxel limits: 0 clipped, 2000189 survived, 6529832 were zero
++ writing result junk.SSwarper.bdcqBmkqmvW_MASK.nii...
++ Output dataset ./junk.SSwarper.bdcqBmkqmvW_MASK.nii
++ 3dcalc: AFNI version=AFNI_16.2.16 (Sep 4 2016) [64-bit]
++ Authored by: A cast of thousands
** ERROR (nifti_image_read): failed to find header file for './junk.SSwarper.bdcqBmkqmvW_TAL5.nii'
** FATAL ERROR: can't open dataset ./junk.SSwarper.bdcqBmkqmvW_TAL5.nii
Any help would be appreciated.
Best,
giovanni
