AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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charujing123
December 17, 2018 10:00AM
Hi
After running the program, there was no PNG in the anat_01.
Here is the program I used.
# I/O path, same as above; just need the "proc" dirs now
set path_P_ss = /Users/caroline/CON_IA27/fatcat/data_proc/SUBJ_001

# reference anatomical volumes to which we axialize
set here = $PWD/fatcat_proc_mni_ref
set ref_t2w = $here/mni_icbm152_t1_tal_nlin_sym_09a_MSKD_ACPCE.nii.gz
set ref_t2w_wt = $here/mni_icbm152_t1_tal_nlin_sym_09a_MSKD_ACPCE_wtell.nii.gz

fat_proc_axialize_anat \
-inset $path_P_ss/anat_00/s005a1001.nii \
-prefix $path_P_ss/anat_01/t1w \
-mode_t1w \
-refset $ref_t2w \
-extra_al_wtmask $ref_t2w_wt \
-out_match_ref
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Subject Author Posted

no png after fat_proc_axialize_anat

charujing123 December 17, 2018 10:00AM

Re: no png after fat_proc_axialize_anat

ptaylor December 17, 2018 10:07AM

Re: no png after fat_proc_axialize_anat

charujing123 December 17, 2018 07:01PM

Re: no png after fat_proc_axialize_anat

ptaylor December 18, 2018 09:25AM

Re: no png after fat_proc_axialize_anat

charujing123 December 18, 2018 09:56AM

Re: no png after fat_proc_axialize_anat

ptaylor December 18, 2018 10:41AM

Re: no png after fat_proc_axialize_anat

charujing123 December 20, 2018 12:03AM