AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
December 20, 2018 07:42AM
Actually, because others have been in that same situation, fat_proc_convert_dcm_dwis will do the same conveniences of centering the volume, making it a nicer orientation (RAI), and making images, but starting from NII and bvec/bvals, as if the dcm2niix(_afni) part had already been run: 
fat_proc_convert_dcm_dwis  \
        -innii    study/subj-001/acq_piece_0*.nii.gz     \
        -inbvec   study/subj-001/acq_piece_0*.bvec       \
        -inbval   study/subj-001/acq_piece_0*.bval       \
        -prefix   study/subj-001/dwi_all
        -do_movie AGIF

--pt
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Subject Author Posted

no ap_sepscl.sag.png for fat_proc_select_vols

charujing123 December 20, 2018 12:33AM

Re: no ap_sepscl.sag.png for fat_proc_select_vols

ptaylor December 20, 2018 07:42AM

Re: no ap_sepscl.sag.png for fat_proc_select_vols

charujing123 December 20, 2018 10:41AM