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December 28, 2018 01:03PM
As Paul said, the subcortical isn't included in the surface meshes. The general approach is to do each surface separately (left, right) and then a third analysis for sub-cortical. You could use 3dSurf2Vol to create a mask fo the whole-brain volume that isn't represented by the surface-based analyses.

-Peter
Subject Author Posted

Is subcortical brain involeved in Surface based analysis?

charujing123 December 24, 2018 06:29AM

Re: Is subcortical brain involeved in Surface based analysis?

ptaylor December 24, 2018 05:25PM

Re: Is subcortical brain involeved in Surface based analysis?

Peter Molfese December 28, 2018 01:03PM

Re: Is subcortical brain involeved in Surface based analysis?

Daniel Glen December 28, 2018 03:52PM

Re: Is subcortical brain involeved in Surface based analysis?

charujing123 December 30, 2018 09:19AM

Re: Is subcortical brain involved in Surface based analysis?

Daniel Glen December 31, 2018 12:31PM

Re: Is subcortical brain involeved in Surface based analysis?

charujing123 December 30, 2018 09:16AM

Re: Is subcortical brain involeved in Surface based analysis?

Peter Molfese January 03, 2019 03:32PM



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