AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 28, 2018 01:03PM
As Paul said, the subcortical isn't included in the surface meshes. The general approach is to do each surface separately (left, right) and then a third analysis for sub-cortical. You could use 3dSurf2Vol to create a mask fo the whole-brain volume that isn't represented by the surface-based analyses.

-Peter
Subject Author Posted

Is subcortical brain involeved in Surface based analysis?

charujing123 December 24, 2018 06:29AM

Re: Is subcortical brain involeved in Surface based analysis?

ptaylor December 24, 2018 05:25PM

Re: Is subcortical brain involeved in Surface based analysis?

Peter Molfese December 28, 2018 01:03PM

Re: Is subcortical brain involeved in Surface based analysis?

Daniel Glen December 28, 2018 03:52PM

Re: Is subcortical brain involeved in Surface based analysis?

charujing123 December 30, 2018 09:19AM

Re: Is subcortical brain involved in Surface based analysis?

Daniel Glen December 31, 2018 12:31PM

Re: Is subcortical brain involeved in Surface based analysis?

charujing123 December 30, 2018 09:16AM

Re: Is subcortical brain involeved in Surface based analysis?

Peter Molfese January 03, 2019 03:32PM