AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 15, 2019 07:17PM
Thanks a lot Daniel, that worked!

Also, just as a note for anybody trying to do similar stuff, I ended up doing a dummy pass of 3dNwarpApply (3dNwarpApply -prefix $out -nwarp 'IDENT(session1+orig)' -master session1+orig -source session1+orig -interp NN) on everything before doing anything else. I started doing that sometime ago after encountering problems using 3dNwarpApply to apply all my preprocessing in one steps. 3dNwarpApply seemed to change something in the header that affected slice position, which was problem for me who is not deobliquing and incorporating fsl and freesurfer tools. The dummy pass allowed this change to happen the very beginning and seems to prevent funny things to happen later.

Cheers
Sébastien
Subject Author Posted

Change scanner-space position of the imaging grid to match that of another imaging grid of the same dimensions

Sébastien Proulx January 11, 2019 03:29PM

Re: Change scanner-space position of the imaging grid to match that of another imaging grid of the same dimensions

Daniel Glen January 15, 2019 01:56PM

Re: Change scanner-space position of the imaging grid to match that of another imaging grid of the same dimensions

Sébastien Proulx January 15, 2019 07:17PM

Re: Change scanner-space position of the imaging grid to match that of another imaging grid of the same dimensions

Daniel Glen January 15, 2019 11:33PM

Re: Change scanner-space position of the imaging grid to match that of another imaging grid of the same dimensions

Sébastien Proulx January 16, 2019 01:48PM