AFNI Message Board

History of AFNI updates  

|
January 14, 2019 09:00PM
Dear,

I'm conducting preprocessing on resting state fMRI data and make alignment for anatomical and resting state fMRI data, with warning:

If you are performing spatial transformations on an oblique dset,
  such as ./101-BOLD-EC-volreg-lp-dt_temp+orig.BRIK,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running:
     3dWarp -deoblique
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.

I use 3dWarp -gridset 101-BOLD-EC-volreg-lp-dt_temp+orig -deoblique 101-BOLD-EC-volreg-lp-dt_temp+orig for oblique correction, with large part of the brain been cutted off, which makes me confused, are there any suggestions?

Best,
Peng
Subject Author Posted

How to use 3dWarp for oblique correction?

Peng Ren January 14, 2019 09:00PM

Re: How to use 3dWarp for oblique correction?

Daniel Glen January 14, 2019 09:03PM

Re: How to use 3dWarp for oblique correction?

Peng Ren January 14, 2019 09:19PM

Re: How to use 3dWarp for oblique correction?

Daniel Glen January 15, 2019 01:34PM

Re: How to use 3dWarp for oblique correction?

Peng Ren January 15, 2019 09:30PM



Sorry, only registered users may post in this forum.

Click here to login