AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 04, 2019 07:36AM
Hi all,

Unfortunately my worst nightmare was realized, and even though it looks like the group x condition interaction was significant (see post above), the post hoc GLTs are all non-significant (at FDR-corrected 0.05). How is that possible? Am I coding the GLTs incorrectly, missing post-hoc tests, reading the interaction incorrectly (I'm setting the interaction sub-brick for both the overlay and threshold), thresholding incorrectly, etc.? I've included the code below (see previous posts in this thread for the data table), and would be willing to send the MVM output file if necessary.

Thanks,
Laura

3dMVM -prefix WithGLTs \
-jobs 8 \
-bsVars group \
-wsVars condition \
-SS_type 2 \
-mask group_mask.nii \
-num_glt 24 \
-gltLabel 1 SPEECH_TDvRD -gltCode 1 'group : 1*TD -1*RD condition : 1*SPEECH' \
-gltLabel 2 NOISE_TDvRD -gltCode 2 'group : 1*TD -1*RD condition : 1*NOISE' \
-gltLabel 3 UNREL_TDvRD -gltCode 3 'group : 1*TD -1*RD condition : 1*UNREL' \
-gltLabel 4 PSW_TDvRD -gltCode 4 'group : 1*TD -1*RD condition : 1*PSW' \
-gltLabel 5 FF_TDvRD -gltCode 5 'group : 1*TD -1*RD condition : 1*FF' \
-gltLabel 6 OPplus_TDvRD -gltCode 6 'group : 1*TD -1*RD condition : 1*OPplus' \
-gltLabel 7 OPminus_TDvRD -gltCode 7 'group : 1*TD -1*RD condition : 1*OPminus' \
-gltLabel 8 SEM_TDvRD -gltCode 8 'group : 1*TD -1*RD condition : 1*SEM' \
-gltLabel 9 SPEECH_TDvEL -gltCode 9 'group : 1*TD -1*EL condition : 1*SPEECH' \
-gltLabel 10 NOISE_TDvEL -gltCode 10 'group : 1*TD -1*EL condition : 1*NOISE' \
-gltLabel 11 UNREL_TDvEL -gltCode 11 'group : 1*TD -1*EL condition : 1*UNREL' \
-gltLabel 12 PSW_TDvEL -gltCode 12 'group : 1*TD -1*EL condition : 1*PSW' \
-gltLabel 13 FF_TDvEL -gltCode 13 'group : 1*TD -1*EL condition : 1*FF' \
-gltLabel 14 OPplus_TDvEL -gltCode 14 'group : 1*TD -1*EL condition : 1*OPplus' \
-gltLabel 15 OPminus_TDvEL -gltCode 15 'group : 1*TD -1*EL condition : 1*OPminus' \
-gltLabel 16 SEM_TDvEL -gltCode 16 'group : 1*TD -1*EL condition : 1*SEM' \
-gltLabel 17 SPEECH_RDvEL -gltCode 17 'group : 1*RD -1*EL condition : 1*SPEECH' \
-gltLabel 18 NOISE_RDvEL -gltCode 18 'group : 1*RD -1*EL condition : 1*NOISE' \
-gltLabel 19 UNREL_RDvEL -gltCode 19 'group : 1*RD -1*EL condition : 1*UNREL' \
-gltLabel 20 PSW_RDvEL -gltCode 20 'group : 1*RD -1*EL condition : 1*PSW' \
-gltLabel 21 FF_RDvEL -gltCode 21 'group : 1*RD -1*EL condition : 1*FF' \
-gltLabel 22 OPplus_RDvEL -gltCode 22 'group : 1*RD -1*EL condition : 1*OPplus' \
-gltLabel 23 OPminus_RDvEL -gltCode 23 'group : 1*RD -1*EL condition : 1*OPminus' \
-gltLabel 24 SEM_RDvEL -gltCode 24 'group : 1*RD -1*EL condition : 1*SEM' \
-dataTable @table.txt
Subject Author Posted

3dMVM error

Laura January 30, 2019 12:09PM

Re: 3dMVM error

gang January 31, 2019 12:34PM

Re: 3dMVM error

Laura January 31, 2019 01:09PM

Re: 3dMVM error

ptaylor January 31, 2019 01:49PM

Re: 3dMVM error

Laura January 31, 2019 06:09PM

Re: 3dMVM error

Laura February 04, 2019 07:36AM

Re: 3dMVM error

gang February 04, 2019 05:00PM