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joy0617
February 06, 2019 01:52AM
Hi,

I would like to extract beta weights using 3dbucket command but I'm getting this error:

3dbucket -prefix sub03_betas stats.sub03+orig’[1..73(3)]’
Badly placed ()'s.

Then I tried this:

3dbucket -prefix sub03_betas stats.sub03+orig’[1 4 7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73]’
++ 3dbucket: AFNI version=AFNI_19.0.07 (Feb 5 2019) [64-bit]
can't open dataset stats.sub03+orig’

But the dataset is in the dir when I'm running the 3dbucket:

ls
3dDeconvolve.err mat.basewarp.aff12.1D
@epi_review.sub03 mat.r01.vr.aff12.1D
@ss_review_basic mat.r01.warp.aff12.1D
@ss_review_driver mat.r02.vr.aff12.1D
@ss_review_driver_commands mat.r02.warp.aff12.1D
S03_t1+orig.BRIK mat.r03.vr.aff12.1D
S03_t1+orig.HEAD mat.r03.warp.aff12.1D
S03_t1_al_junk+orig.BRIK mat.r04.vr.aff12.1D
S03_t1_al_junk+orig.HEAD mat.r04.warp.aff12.1D
S03_t1_al_junk_mat.aff12.1D motion_demean.1D
S03_t1_ns+orig.BRIK.gz motion_deriv.1D
S03_t1_ns+orig.HEAD motion_sub03_CENSORTR.txt
TSNR.sub03+orig.BRIK.gz motion_sub03_censor.1D
TSNR.sub03+orig.HEAD motion_sub03_enorm.1D
X.jpg out.allcostX.txt
X.nocensor.xmat.1D out.cormat_warn.txt
X.stim.xmat.1D out.gcor.1D
X.xmat.1D out.mask_ae_dice.txt
all_runs.sub03+orig.BRIK.gz out.mask_ae_overlap.txt
all_runs.sub03+orig.HEAD out.min_outlier.txt
anat_final.sub03+orig.BRIK.gz out.pre_ss_warn.txt
anat_final.sub03+orig.HEAD out.ss_review.sub03.txt
blur.epits.1D outcount.r01.1D
blur.errts.1D outcount.r02.1D
blur_est.sub03.1D outcount.r03.1D
censor_sub03_combined_2.1D outcount.r04.1D
corr_brain+orig.BRIK.gz outcount_rall.1D
corr_brain+orig.HEAD outcount_sub03_censor.1D
dfile.r01.1D pb00.sub03.r01.tcat+orig.BRIK
dfile.r02.1D pb00.sub03.r01.tcat+orig.HEAD
dfile.r03.1D pb00.sub03.r02.tcat+orig.BRIK
dfile.r04.1D pb00.sub03.r02.tcat+orig.HEAD
dfile_rall.1D pb00.sub03.r03.tcat+orig.BRIK
errts.sub03+orig.BRIK.gz pb00.sub03.r03.tcat+orig.HEAD
errts.sub03+orig.HEAD pb00.sub03.r04.tcat+orig.BRIK
files_ACF pb00.sub03.r04.tcat+orig.HEAD
final_epi_vr_base_min_outlier+orig.BRIK pb01.sub03.r01.despike+orig.BRIK
final_epi_vr_base_min_outlier+orig.HEAD pb01.sub03.r01.despike+orig.HEAD
fitts.sub03+orig.BRIK.gz pb01.sub03.r02.despike+orig.BRIK
fitts.sub03+orig.HEAD pb01.sub03.r02.despike+orig.HEAD
full_mask.sub03+orig.BRIK.gz pb01.sub03.r03.despike+orig.BRIK
full_mask.sub03+orig.HEAD pb01.sub03.r03.despike+orig.HEAD
gmean.errts.unit.1D pb01.sub03.r04.despike+orig.BRIK
ideal_01.1D pb01.sub03.r04.despike+orig.HEAD
ideal_02.1D pb02.sub03.r01.tshift+orig.BRIK
ideal_03.1D pb02.sub03.r01.tshift+orig.HEAD
ideal_04.1D pb02.sub03.r02.tshift+orig.BRIK
ideal_05.1D pb02.sub03.r02.tshift+orig.HEAD
ideal_06.1D pb02.sub03.r03.tshift+orig.BRIK
ideal_07.1D pb02.sub03.r03.tshift+orig.HEAD
ideal_08.1D pb02.sub03.r04.tshift+orig.BRIK
ideal_09.1D pb02.sub03.r04.tshift+orig.HEAD
ideal_10.1D pb03.sub03.r01.volreg+orig.BRIK
ideal_11.1D pb03.sub03.r01.volreg+orig.HEAD
ideal_12.1D pb03.sub03.r02.volreg+orig.BRIK
ideal_13.1D pb03.sub03.r02.volreg+orig.HEAD
ideal_14.1D pb03.sub03.r03.volreg+orig.BRIK
ideal_15.1D pb03.sub03.r03.volreg+orig.HEAD
ideal_16.1D pb03.sub03.r04.volreg+orig.BRIK
ideal_17.1D pb03.sub03.r04.volreg+orig.HEAD
ideal_18.1D pb04.sub03.r01.scale+orig.BRIK.gz
ideal_19.1D pb04.sub03.r01.scale+orig.HEAD
ideal_20.1D pb04.sub03.r02.scale+orig.BRIK.gz
ideal_21.1D pb04.sub03.r02.scale+orig.HEAD
ideal_22.1D pb04.sub03.r03.scale+orig.BRIK.gz
ideal_23.1D pb04.sub03.r03.scale+orig.HEAD
ideal_24.1D pb04.sub03.r04.scale+orig.BRIK.gz
ideal_25.1D pb04.sub03.r04.scale+orig.HEAD
ideal_filler.1D stats.REML_cmd
mask_anat.sub03+orig.BRIK.gz stats.sub03+orig.BRIK.gz
mask_anat.sub03+orig.HEAD stats.sub03+orig.HEAD
mask_epi_anat.sub03+orig.BRIK.gz stimuli
mask_epi_anat.sub03+orig.HEAD sum_ideal.1D
mask_epi_extents+orig.BRIK.gz vr_base_min_outlier+orig.BRIK
mask_epi_extents+orig.HEAD vr_base_min_outlier+orig.HEAD

I also tried to extract only one beta weight first:

3dbucket -prefix sub03_betas stats.sub03+orig’[1]’
3dbucket: No match.

Any suggestions would be really appreciated.

Thanks,
Joy
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Subject Author Posted

3dbucket error

joy0617 February 06, 2019 01:52AM

Re: 3dbucket error

ptaylor February 06, 2019 10:12AM

Re: 3dbucket error

joy0617 February 06, 2019 10:44AM

Re: 3dbucket error

rick reynolds February 06, 2019 11:02AM