Running that does work. But opening a new window (or restarting the computer and opening a new window) fails again.
The .bashrc file doe shave the DYLD_LIBRARY_PATH set, and is as follows:
#setup AFNI
export PATH=/usr/local/abin:$PATH
export DYLD_FALLBACK_LIBRARY_PATH=/opt/X11/lib:/usr/local/abin
#setup FSL
FSLDIR=/usr/local/fsl
. ${FSLDIR}/etc/fslconf/fsl.sh
PATH=${FSLDIR}/bin:${PATH}
export FSLDIR PATH
#setup dcm2nii and haskins_fmri_timer
export PATH=/usr/local/dicomtools:$PATH
#setup fBIRN QA checking
export PATH=/usr/local/xcede/bin:$PATH
#setup Freesurfer
export FREESURFER_HOME=/usr/local/freesurfer
alias freesurfer="source $FREESURFER_HOME/SetUpFreeSurfer.sh"
alias sinatra="sinatra.haskins.yale.internal"
export DYLD_LIBRARY_PATH=$\{DYLD_LIBRARY_PATH\}:/opt/X11/lib/flat_namespacemile
