Thank you for your help!
The command that I ran was:
tcsh -x MVManovaFixed.txt > diary.txt &
And here is the relevant output:
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 3.13.0-165-generic
version: #215-Ubuntu SMP Wed Jan 16 11:46:47 UTC 2019
distribution: Ubuntu 14.04 trusty
number of CPUs: 8
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/abclab/linux_openmp_64/afni
afni version : Precompiled binary linux_openmp_64: Mar 3 2017
: AFNI_17.0.13
AFNI_version.txt : AFNI_17.0.13, linux_openmp_64, Mar 03 2017
which python : /usr/bin/python
python version : 2.7.6
which R : /usr/bin/R
R version : R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/abclab/linux_openmp_64/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.4)
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : missing
------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib/python2.7/dist-packages/PyQt4
++ module loaded: PyQt4
-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/abclab/MATLAB/R2016b/bin:/home/abclab/Slicer-4.6.3:/home/abclab/linux_openmp_64
PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /home/abclab/linux_openmp_64
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.0.1ubuntu2 for amd64 compiled on Jan 18 2019 20:24:31
have Ubuntu system: Ubuntu 14.04 trusty
========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate from 'tcsh'
* shell bash: consider sourcing (non-login) .bashrc from (login) .profile
* consider running: cp /home/abclab/linux_openmp_64/AFNI.afnirc ~/.afnirc
* consider running "suma -update_env" for .sumarc
* consider running: apsearch -update_all_afni_help
* insufficient data for AFNI bootcamp
