AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 28, 2019 05:52AM
Thanks Gang. I did as you said, but when I install 'curl' I get the following error:

------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
* deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
* rpm: libcurl-devel (Fedora, CentOS, RHEL)
* csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/home/galit/R/curl’
* restoring previous ‘/home/galit/R/curl’
ERROR: dependency ‘xml2’ is not available for package ‘spelling’
* removing ‘/home/galit/R/spelling’

The downloaded source packages are in
‘/tmp/Rtmp18hMY2/downloaded_packages’


libcurl is installed (so it says when I try to install it). But I am not sure how to follow the rest of the instructions. Here is what I tried to do (and I might have done it all wrong):

1. I checked if 'pkg-config' is in my PATH:
pkg-config --variable pc_path pkg-config
/usr/local/lib/x86_64-linux-gnu/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/share/pkgconfig:/usr/lib/x86_64-linux-gnu/pkgconfig:/usr/lib/pkgconfig:/usr/share/pkgconfig

I suppose it means that it is there?

2. I set PKG_CONFIG_PATH to search for packages where the downloaded R packages are:
setenv PKG_CONFIG_PATH /tmp/RtmpUqDXzp/downloaded_packages

It still didn't work, so I suppose I did something wrong here. Your help is highly appreciated!
Subject Author Posted

afex and phia not found when running 3dMVM

Galit February 25, 2019 07:03AM

Re: afex and phia not found when running 3dMVM

ptaylor February 25, 2019 07:48AM

Re: afex and phia not found when running 3dMVM

Galit February 25, 2019 08:34AM

Re: afex and phia not found when running 3dMVM

ptaylor February 25, 2019 10:28AM

Re: afex and phia not found when running 3dMVM

Galit February 26, 2019 06:08AM

Re: afex and phia not found when running 3dMVM

ptaylor February 26, 2019 10:46AM

Re: afex and phia not found when running 3dMVM

Galit February 27, 2019 04:59AM

Re: afex and phia not found when running 3dMVM

gang February 27, 2019 10:32AM

Re: afex and phia not found when running 3dMVM

Galit February 28, 2019 05:52AM

Re: afex and phia not found when running 3dMVM

gang February 28, 2019 02:02PM

Re: afex and phia not found when running 3dMVM

Galit March 05, 2019 10:25AM

Re: afex and phia not found when running 3dMVM

ptaylor March 05, 2019 11:45AM