afni.nimh.nih.gov

Hi Jung-

1) You can use 3dROIstats to get values for EVERY single ROI in your atlas on a given dataset.

2) whereami uses not-so-secret transforms to convert from one space to another.

3) I would probably convert your ROI to different spaces using a variety of options. I believe there's a function in whereami's command line (-show_chain) that would be of help. Daniel Glen may have more suggestions

-Pete