History of AFNI updates  

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March 20, 2019 03:24AM
Thanks, Paul for the suggestion.

Here is the afni_proc code for preprocessing.

afni_proc.py -subj_id 004 \
	-blocks despike tshift align tlrc volreg blur mask scale regress \
	-copy_anat 004_SurfVol.nii \
	-anat_follower_ROI aaseg anat aparc.a2009s+aseg.nii \
	-anat_follower_ROI aeseg epi aparc.a2009s+aseg.nii \
	-anat_follower_ROI FSvent epi 001_vent.nii \
	-anat_follower_ROI FSWe epi 002_wm.nii \
	-anat_follower_erode FSvent FSWe \
	-dsets Rest.nii \
	-tcat_remove_first_trs 3 \
	-volreg_align_to MIN_OUTLIER \
	-volreg_align_e2a \
	-volreg_tlrc_warp  \
        -tlrc_base MNI152_2009_template_SSW.nii.gz \
	-tlrc_NL_warp \
      	-tlrc_NL_warped_dsets \
         	anatQQ.-base.nii \
         	anatQQ.-base.aff12.1D \
         	anatQQ.-base_WARP.nii \
	-regress_ROI_PC FSvent 3 \
	-regress_anaticor_fast \
	-regress_anaticor_label FSWe \
        -regress_bandpass 0.01 0.1 \
	-regress_apply_mot_types demean deriv \
	-regress_RSFC \
	-regress_est_blur_epits \
	-regress_est_blur_errts \
	-regress_run_clustsim no
And below is the error message copied from the terminal for the above proc file.
cat_matvec -ONELINE anatQQ.-base_WARP.nii anatQQ.-base.aff12.1D

Fatal Signal 11 (SIGSEGV) received
    mri_read_double_ascii
   THD_read_dvecmat
  cat_matvec
 Bottom of Debug Stack
** AFNI version = AFNI_18.0.05  Compile date = Jan 13 2018
** [[Precompiled binary linux_ubuntu_16_64: Jan 13 2018]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /home/naren123/.afni.crashlog

Plz, correct me if I'm following any wrong step.

Thanks
-Korann
Subject Author Posted

normalization of resting data to MNI152 template Attachments

korannvit March 16, 2019 03:18AM

Re: normalization of resting data to MNI152 template

ptaylor March 16, 2019 07:17AM

Re: normalization of resting data to MNI152 template

korannvit March 19, 2019 02:37AM

Re: normalization of resting data to MNI152 template

ptaylor March 19, 2019 09:55AM

Re: normalization of resting data to MNI152 template

korannvit March 20, 2019 03:24AM

Re: normalization of resting data to MNI152 template

ptaylor March 20, 2019 08:19AM

Re: normalization of resting data to MNI152 template

rick reynolds March 20, 2019 11:22AM

Re: normalization of resting data to MNI152 template

korannvit March 21, 2019 07:03AM

Re: normalization of resting data to MNI152 template

ptaylor March 21, 2019 10:08AM

Re: normalization of resting data to MNI152 template Attachments

korannvit March 23, 2019 01:55AM

Re: normalization of resting data to MNI152 template

ptaylor March 23, 2019 07:08AM

Re: normalization of resting data to MNI152 template

korannvit March 21, 2019 06:59AM