AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 27, 2019 03:15PM
Hi-

I am sorry, but I'm not sure. I've tried it on my system, and things worked.

I removed R with:
sudo apt-get remove r-base-core

Then, this is what the end of my /etc/apt/sources.list file looks like, if that is useful (though, note that this forum format will change the full links to the abbreviations, that you will have to see by clicking on them):
## Uncomment the following two lines to add software from Canonical's
## 'partner' repository.
## This software is not part of Ubuntu, but is offered by Canonical and the
## respective vendors as a service to Ubuntu users.
# deb [archive.canonical.com] bionic partner
# deb-src [archive.canonical.com] bionic partner

deb [security.ubuntu.com] bionic-security main restricted
# deb-src [security.ubuntu.com] bionic-security main restricted
deb [security.ubuntu.com] bionic-security universe
# deb-src [security.ubuntu.com] bionic-security universe
deb [security.ubuntu.com] bionic-security multiverse
# deb-src [security.ubuntu.com] bionic-security multiverse
deb [cran.cnr.berkeley.edu] bionic/

deb [cloud.r-project.org] bionic-cran35/

After that, I ran:
sudo apt-get update
so the manager could see the changes.

Then:
sudo apt-get install -y r-base-dev
to install R, which should be some v3.5.* now.

Then,
rPkgsInstall -pkgs ALL

... and that updated the new packages.

--pt
Subject Author Posted

Bash/tcsh and missing R packages when installing AFNI

SHUN March 24, 2019 11:12AM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 24, 2019 11:50AM

Re: Bash/tcsh and missing R packages when installing AFNI

SHUN March 24, 2019 12:01PM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 24, 2019 08:25PM

Re: Bash/tcsh and missing R packages when installing AFNI

gang March 25, 2019 01:43PM

Re: Bash/tcsh and missing R packages when installing AFNI

SHUN March 25, 2019 05:34PM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 25, 2019 05:39PM

Re: Bash/tcsh and missing R packages when installing AFNI

SHUN March 27, 2019 10:34AM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 27, 2019 01:54PM

Re: Bash/tcsh and missing R packages when installing AFNI

SHUN March 27, 2019 02:39PM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 27, 2019 03:15PM

Re: Bash/tcsh and missing R packages when installing AFNI

SHUN March 27, 2019 04:35PM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 30, 2019 06:14AM

Re: Bash/tcsh and missing R packages when installing AFNI

SHUN March 30, 2019 10:19AM

Re: Bash/tcsh and missing R packages when installing AFNI

ptaylor March 30, 2019 12:28PM