AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Liu Mengxing
April 05, 2019 06:50AM
Hi afni group,

I am showing data in surface world with suma_MNI152_2009.

What I usually do is to use the spec file std.141.MNI152_2009_lh.spec, and switch to the inflated surface.
command: 
suma -spec std.141.MNI152_2009_lh.spec


When I tried to using DriveSuma to replicate what I did manaully,
with command : 
DriveSuma -com show_surf -i std.141.lh.inflated.gii


It did show the inflated surface, but the sulcus and gyrus were not as what it looked like when using spec file manually. I checked the spec file, seems like there are other manipulations when you use spec file to choose the surface you want.

I wonder if there is one way to replicate the behaviors with DriveSuma?

Thanks!

best,
Meng
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Subject Author Posted

using spec file to load surface in DriveSuma Attachments

Liu Mengxing April 05, 2019 06:50AM

Re: using spec file to load surface in DriveSuma

rick reynolds April 05, 2019 09:31AM

Re: using spec file to load surface in DriveSuma

Liu Mengxing April 05, 2019 03:17PM

Re: using spec file to load surface in DriveSuma

rick reynolds April 05, 2019 03:35PM