AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 11, 2019 01:08PM
Thank you! That works great!

I have two additional questions (and hopefully my last questions - thanks again for all of your help):

1) When I run 2 sessions at a time, I do get similar beta coefficients, but I get a slightly bigger T-Stat than if I run each run individually. Do you know why that is?

2) For one of my datasets, I ran the same scan twice and participants did the exact same task each time. For this, my plan is to average the two runs with:

gltsym 'SYM: 0.5*run1 +0.5*run2'

within each run, I would like to do a contrast of the means for a specific taks (each run contains a block design: rest, lefthand, rest, right hand, rest, both hands, rest). For example:

-gltsym 'SYM: (0.5*run1Task1 +0.5*run2Task1) - (0.5*run1Task2 +0.5*run2Task2)'

The gltsym does not like it when I use parenthesis. How can I denote this properly?

Thanks
Subject Author Posted

Contrast between two separate scans

Dxc536 April 05, 2019 11:15AM

Re: Contrast between two separate scans

gang April 05, 2019 04:29PM

Re: Contrast between two separate scans

Dxc536 April 08, 2019 11:47AM

Re: Contrast between two separate scans

gang April 08, 2019 05:19PM

Re: Contrast between two separate scans

Cunnind6 April 10, 2019 01:56PM

Re: Contrast between two separate scans

gang April 10, 2019 08:53PM

Re: Contrast between two separate scans

Dxc536 April 11, 2019 01:08PM

Re: Contrast between two separate scans

Cunnind6 April 11, 2019 07:07PM

Re: Contrast between two separate scans

gang April 12, 2019 01:57PM