Thanks Daniel for uploading the data.
I am trying to parcellate my individual subject brain with HCP parcellation, so I could extract the structure from each sub in native space.
I'm following the method below, except do it in each subject instead with MNI_152_T1.
[
afni.nimh.nih.gov]
— convert to nii
mri_convert ?h.Glasser2016.mgz ?h.Glasser2016.nii
— use Freesurfer to move from fsaverage to sub01
mri_surf2surf —srcsubject fsaverage —trgsubject sub01 —sval atlasmgz/?h.Glasser2016.nii —tval sub01/SUMA/?h.Glasser_HCP.gii —mapmethod nnf —hemi ?h
cd sub01/SUMA
— use SUMA to resample the surface to std.141
SurfToSurf -i_gii std.141.?h.smoothwm.gii -i_gii ?h.smoothwm.gii -prefix res.141.lh -mapfile std.141.sub01_?h.niml.M2M -dset ?h.Glasser_HCP.gii -output_params NearestNode
the res.141.lh.Glasser_HCP.niml.dset that I got, will you say it's in native space?
I compared this surface parcellation, with the surface file you uploaded yesterday, by projecting them to MNI152_a2009, and two surface looks exactly the same.