afni.nimh.nih.gov

Hi, Ruyuan-

Can you use "-master ANAT -mast_dxyz 3.0" (or whatever you want your final spacing to be)?

Note that typically in processing with afni_proc.py, individual transformations are calculated, and then concatenated before applying them to the EPI data. Is afni_proc.py not able to help with your processing needs?

--pt