AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 08, 2019 04:50PM
Thank you for your response!

I did as you said and found the file in the afni_proc.py resulting script.
For anyone else who might be in the same position, I used "anatQQ.s001.aff12.1D", and my 3dNwarpApply looked like the following:

cat_matvec -ONELINE \
anatQQ.s001.aff12.1D \
anatSS.s001_al_junk_mat.aff12.1D -I \
mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D


3dNwarpApply -master anatQQ.s001+tlrc -dxyz 3 \
-source pb01.$subj.r$run.tshift+orig \
-nwarp "anatQQ.s001_WARP.nii mat.r$run.warp.aff12.1D" \
-prefix rm.epi.nomask.r$run


Thanks again for the help!
Subject Author Posted

Standardizing functional data using SSWarper

jdp71 May 08, 2019 11:23AM

Re: Standardizing functional data using SSWarper

ptaylor May 08, 2019 12:54PM

Re: Standardizing functional data using SSWarper

jdp71 May 08, 2019 04:50PM