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May 08, 2019 02:32PM
Hi AFNI experts,

I'm trying to do probabilistic tractography with 3dDWUncert & 3dProbTrackID. I followed the instructions on this blog. Here it is recommended to rotate the bvecs. However, this blog is rather old and might be outdated.
Therefore my question: Is it enough to convert by bvecs like this
1dDW_Grad_o_Mat++ \
    -in_col_vec bvecs \
    -in_bvals bvals \
    -out_col_matA bvecs_matA.txt
and use the output then for 3dDWUncert & 3dProbTrackID?

Would be great to get some feedback on this!
Cheers,
Steph
Subject Author Posted

Rotate bvecs for motion correction?

StephanieWinkelbeiner May 08, 2019 02:32PM

Re: Rotate bvecs for motion correction?

ptaylor May 08, 2019 03:25PM

Re: Rotate bvecs for motion correction?

Peter Molfese May 08, 2019 04:18PM

Re: Rotate bvecs for motion correction?

StephanieWinkelbeiner May 09, 2019 09:44AM