AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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lhopkins
May 13, 2019 11:21PM
Hi Rick:

Thanks for your response! The identity solution seems completely reasonable, thank you for suggesting it.

I was having issues aligning my T1 to my EPI. Daniel suggested that the skullstrip was, ironically, doing TOO GOOD of a job and removing some CSF that could have been used to better align my EPI so the solution was a dilated version of skullstrip. However, I have performed both this tactic as well as SSWarper and the statistical results for some of my participants come out very similar. I may end up using the SSWarper version of the script templates except in cases where there are alignment issues and then I can insert the identity as you suggested.

Thank you again for your suggestion as well as for everything else!
Lauren
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Subject Author Posted

Can you edit cat_matvec from the afni_proc.py command?

lhopkins May 11, 2019 11:02PM

Re: Can you edit cat_matvec from the afni_proc.py command?

rick reynolds May 13, 2019 01:39PM

Re: Can you edit cat_matvec from the afni_proc.py command?

lhopkins May 13, 2019 11:21PM

Re: Can you edit cat_matvec from the afni_proc.py command?

rick reynolds May 14, 2019 08:55AM