AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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jdp71
May 31, 2019 10:00AM
Input:

3dinfo -ad3 -o3 -orient -prefix 1_MPRAGE+orig $File_Path/MNI152_2009_template_SSW.nii.gz


Output:

1.200000 1.000000 1.000000 -130.783707 -137.438400
419.236206 LPI 1_MPRAGE

1.000000 1.000000 1.000000 96.000000 132.000000
-78.000000 LPI MNI152_2009_template_SSW.nii.gz






Input:

3dCM 1_MPRAGE+orig $File_Path/MNI152_2009_template_SSW.nii.gz


Output:

-226.882 -237.64 549.06

0.107468 22.5192 9.14651






Then after using @Align_Centers to align the anatomical to the MNI template, here are my results with the same two lines.




Input:

3dinfo -ad3 -o3 -orient -prefix 1_MPRAGE+orig $File_Path/MNI152_2009_template_SSW.nii.gz


Output:

1.200000 1.000000 1.000000 95.400009 137.500000
-109.500000 LPI 1_MPRAGE

1.000000 1.000000 1.000000 96.000000 132.000000
-78.000000 LPI MNI152_2009_template_SSW.nii.gz






Input:

3dCM 1_MPRAGE+orig $File_Path/MNI152_2009_template_SSW.nii.gz


Output:

-0.698524 37.2983 20.3242

0.107468 22.5192 9.14651





After using @Align_Centers I tried running @SSwarper again but it resulted in the same error.
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Subject Author Posted

SS_Warper Standardizing Error

jdp71 May 23, 2019 09:23AM

Re: SS_Warper Standardizing Error

rick reynolds May 23, 2019 09:35AM

Re: SS_Warper Standardizing Error

jdp71 May 29, 2019 03:45PM

Re: SS_Warper Standardizing Error

ptaylor May 29, 2019 03:49PM

Re: SS_Warper Standardizing Error

jdp71 May 31, 2019 10:00AM

Re: SS_Warper Standardizing Error

Daniel Glen May 29, 2019 06:02PM