AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 16, 2021 12:37PM
Hi everyone,

I'm trying to create afni datasets from my freesurfer outputs using @SUMA_Make_Spec_FS but running into an error:

@SUMA_Make_Spec_FS \
-fs_setup \
-sid ${subject} \
-fspath ${SUBJECTS_DIR}/fs/${subject}

I'm getting this error message from that:
" Here's hoping these excerpts from '@SUMA_Make_Spec_FS -help' enlighten:
'-extra_fs_dsets AA BB CC ...'
'-set_space SPACE: Set the space flag of all volumes to'
'-fspath PATH : path to 'surf' and 'orig' directories'

invalid option: '-fs_setup'
program failure: exiting...

cp: No match.
cp: No match.
cp: No match.
cp: /Users/username/Desktop/merp/freesurfer/1001/fs/1001/SUMA/T1.nii: No such file or directory"

-fs_setup shouldn't be an invalid option... any thoughts?

I'm running this on a OS Catalina Version 10.15.6

Thank you in advance for any help and insight!
Julia
Subject Author Posted

@SUMA_Make_Spec_FS Error Message

juliaml2019 February 16, 2021 12:37PM

Re: @SUMA_Make_Spec_FS Error Message

ptaylor February 16, 2021 02:03PM

Re: @SUMA_Make_Spec_FS Error Message

juliaml2019 February 16, 2021 04:38PM