Hi everyone,
I'm trying to create afni datasets from my freesurfer outputs using @SUMA_Make_Spec_FS but running into an error:
@SUMA_Make_Spec_FS \
-fs_setup \
-sid ${subject} \
-fspath ${SUBJECTS_DIR}/fs/${subject}
I'm getting this error message from that:
" Here's hoping these excerpts from '@SUMA_Make_Spec_FS -help' enlighten:
'-extra_fs_dsets AA BB CC ...'
'-set_space SPACE: Set the space flag of all volumes to'
'-fspath PATH : path to 'surf' and 'orig' directories'
invalid option: '-fs_setup'
program failure: exiting...
cp: No match.
cp: No match.
cp: No match.
cp: /Users/username/Desktop/merp/freesurfer/1001/fs/1001/SUMA/T1.nii: No such file or directory"
-fs_setup shouldn't be an invalid option... any thoughts?
I'm running this on a OS Catalina Version 10.15.6
Thank you in advance for any help and insight!
Julia
