AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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insularcortex
June 10, 2019 11:22AM
Dear AFNI experts,

I used Isosurface to create a gii surface of marmoset monkey.

I wanted to convert this surface to freesurfer (fs) format so that I can create a flat map using freesurfer.

However, no matter I used Isosurface to create a (-o_fs) fs surface directly, or using ConvertSurface, the resulting fs surface has a wrong orientation than the volume image.

I attached a screenshot, where the left is the correct gii format and the right is the incorrect fs format.

I also attached the volume image and surface file via:
[drive.google.com]

Thank and look forward to your help!
cirong



Edited 2 time(s). Last edit at 06/10/2019 11:43AM by insularcortex.
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Coordinates and orientation issues for converting gii surface to freesurfer surface Attachments

insularcortex June 10, 2019 11:22AM