AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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ns
July 09, 2019 12:51PM
Hi,
I'd like to perform a global brain connectivity (GBC) analysis and replicate the following procedure described in a paper:
"..first computed GBC maps independently for the safe and threat conditions by correlating each voxel’s timecourse with every other voxel’s timecourse, applying the Fisher’s Z transformation, and averaging across these correlation maps".

The gray matter mask that I use from the TT_N27 atlas has 73500 voxels, which means creating a 73500 x 73500 matrix for each subject, applying a fisher's z, and averaging for each voxel all the Zs to obtain a final brik with one value per voxel.

What are the steps that I need to do after the deconvolution to replicate this procedure?

thanks

ns
Subject Author Posted

global brain connectivity - correlation matrices

ns July 09, 2019 12:51PM

Re: global brain connectivity - correlation matrices

ptaylor July 09, 2019 01:10PM

Re: global brain connectivity - correlation matrices

ns July 09, 2019 04:40PM

Re: global brain connectivity - correlation matrices

ptaylor July 09, 2019 04:55PM

Re: global brain connectivity - correlation matrices

ptaylor July 09, 2019 04:59PM

Re: global brain connectivity - correlation matrices

ns July 09, 2019 05:08PM

Re: global brain connectivity - correlation matrices

ptaylor July 09, 2019 05:11PM