AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
July 18, 2019 09:14AM
Hi Johanna,

This is most likely a sorting issue, where you have file indices that are not zero padded (so 10 comes before 2, for example). You could try having Dimon sort them, instead: 

Dimon -infile_pattern "$anat/DICOM/*dcm" -dicom_org -gert_create_dataset \
          -gert_to3d_prefix ${subj}_anat

If you do try that and have questions, just let me know.

EDIT: I did not originally notice the implied spacing in the options, and have adjusted the command.

- rick



Edited 1 time(s). Last edit at 07/18/2019 09:19AM by rick reynolds.
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Aliasing and dropped slices from anatomical scan Attachments

jjarcho July 17, 2019 12:34PM

Re: Aliasing and dropped slices from anatomical scan

ptaylor July 17, 2019 01:35PM

Re: Aliasing and dropped slices from anatomical scan

rick reynolds July 18, 2019 09:14AM