Hi,

Sorry for my disturbance which is keep rising for a while and thanks for your help. I had a question about error time series, fitts and stats. I perform RS-FMRI analysis which is supported by uber scripts. I wanted to ask some part of my afni_proc.py generated script. Which is at following.

# run the regression analysis
3dDeconvolve -input pb04.$subj.r*.blur+tlrc.HEAD \
-mask full_mask.$subj+tlrc \
-ortvec ROI.WMe_rall.1D ROI.WMe \
-ortvec mot_demean.r01.1D mot_demean_r01 \
-ortvec mot_deriv.r01.1D mot_deriv_r01 \
-polort 2 \
-num_stimts 0 \
-fout -tout -x1D X.xmat.1D -xjpeg X.jpg \
-fitts fitts.$subj \
-errts errts.${subj} \
-x1D_stop \
-bucket stats.$subj

# -- use 3dTproject to project out regression matrix --
3dTproject -polort 0 -input pb04.$subj.r*.blur+tlrc.HEAD \
-mask full_mask.$subj+tlrc \
-ort X.xmat.1D -prefix errts.${subj}.tproject




This is the part that I want to ask. There is no output named fitts and stats. Only from tproject errts. I read at forum it is happening because of the x1D_stop So when I perform further analysis I think something is not correct because I use errts for correlation. My afni_proc.py is at the following;

# ==========================================================================
# script generated by the command:
#
# afni_proc.py -subj_id subjLast -script proc.sub1 -scr_overwrite -blocks \
# despike tshift align tlrc volreg blur mask regress -copy_anat \
# /mnt/f/TEZ/Bipolar/female/${subj}/anat/${subj}_T1w.nii -dsets \
# /mnt/f/TEZ/Bipolar/female/${subj}/func/${subj}_task-rest_bold.nii \
# -tcat_remove_first_trs 4 -align_opts_aea -cost lpc+ -giant_move \
# -volreg_align_to first -volreg_align_e2a -volreg_tlrc_warp -blur_size \
# 6.0 -mask_apply epi -mask_segment_anat yes -mask_segment_erode yes \
# -regress_ROI WMe -regress_apply_mot_types demean deriv \
# -regress_motion_per_run -regress_est_blur_errts -regress_RSFC \
# -regress_bandpass 0.01 0.1

Thanks
Abdullah



Edited 1 time(s). Last edit at 07/17/2019 01:15PM by trabz.