AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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EXP.2086
July 26, 2019 04:34AM
Hi Peter,

Thanks for your answer.

I found that @FSlabel2dset can transform freesurfer label file to SUMA dset directly.

And for the second example in the original question, that is the freesurfer label file in fsaverage surface need to transform to subject surface first, can be solved by this:
Quote
fsaverage label to subject label
setenv SUBJECTS_DIR /path/to/freesurfer/segmentation/topdir

mri_label2label --srcsubject fsaverage --srclabel /path/to/label/$fsaverage_label \
--trgsubject $SubjID --trglabel $SUBJECTS_DIR/$SubjID/label/$subject_label --hemi $hemi --regmethod surface

As the results of @FSlabel2dset is in subject original dense mesh, I want to ask a following question, how to transform the dset in subject original mesh to subject std.141 mesh?

Thank you,
2086
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Subject Author Posted

How to map rois from freesurfer average surface to subject surface?

EXP.2086 July 25, 2019 03:40AM

Re: How to map rois from freesurfer average surface to subject surface?

Peter Molfese July 25, 2019 09:17AM

Re: How to map rois from freesurfer average surface to subject surface?

EXP.2086 July 25, 2019 10:23AM

Re: How to map rois from freesurfer average surface to subject surface?

Peter Molfese July 25, 2019 12:43PM

Re: How to map rois from freesurfer average surface to subject surface?

EXP.2086 July 26, 2019 04:34AM

Re: How to map rois from freesurfer average surface to subject surface?

Peter Molfese July 26, 2019 08:13AM

Re: How to map rois from freesurfer average surface to subject surface?

EXP.2086 July 27, 2019 03:20AM