afni.nimh.nih.gov

To be sure, if you look at how well the ANAT_al_junk+orig (for whatever ANAT is) dataset aligns with the vr_base dataset, does it seem reasonable or very off?

Maybe the lpc cost function is not working so well, or maybe the skull stripping is failing.

How does the skull stripped anat look? (the _al_junk should be stripped)

- rick