I suppose, technically, the skull has been stripped? But most of the brain was stripped along with it (and distorted it somewhat), so it doesn't align with the epi data at all. I at least confirmed that the vr_base does align the original anat (before junk) pretty well. I've attached the _al_junk file and the _al_junk file overlayed with vr_base. I've also used "uber_skel" because it looks like it tries out multiple cost functions: lpa, lpc+, lpc+ZZ, ls, and nmi. But the results between each cost function are very similar to one another.



Edited 1 time(s). Last edit at 08/04/2019 10:21PM by Nshin96.