History of AFNI updates  

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August 16, 2019 12:47PM
Hello, I am trying to remove the last 10 TRs in one of 6 runs and I keep receiving an error when I use the command -tcat_remove_last_trs 0 0 0 10 0 0\ to do so. The error says this: ** error: option -tshifts_opts_ts follows unknown arg #34 (10). Is there another way to remove only the last few TRs for one run during preprocessing? Below is my preprocessing script.

afni_proc.py -subj_id DASHH_7 -verb 2 -script \
DASHH_7_preproc_results_ginormous.tcsh -out_dir 7/results -dsets \
7/func/7_bold_checker_11+orig.HEAD \
7/func/7_bold_checker_15+orig.HEAD \
7/func/7_bold_asset_17+orig.HEAD \
7/func/7_bold_asset_18+orig.HEAD \
7/func/7_bold_asset_20+orig.HEAD \
7/func/7_bold_asset_21+orig.HEAD -anat_has_skull no -copy_anat \
7/anat/7_MPRAGE_masked4+orig.HEAD -blocks despike tshift align tlrc \
volreg blur mask scale regress -tcat_remove_first_trs 4 \
-tcat_remove_last_trs 0 0 0 10 0 0 \
-tshift_opts_ts -tpattern alt+z2 \
-align_opts_aea -save_epi_ns -check_flip -AddEdge -ginormous_move \
-tlrc_base \
/data/nil-bluearc/hershey/unix/DASHH/DASHH_FMRI_2/MNI152_T1_2009c+tlrc.HEAD \
-tlrc_NL_warp -volreg_align_to first
-volreg_interp -heptic \
-volreg_opts_vr
-maxdisp1D
-volreg_align_e2a -volreg_tlrc_warp \
-blur_in_automask
-blur_size 8.0
-regress_censor_motion 0.5
Subject Author Posted

Removing last TRs in only one run

emarler August 16, 2019 12:47PM

Re: Removing last TRs in only one run

rick reynolds August 16, 2019 01:52PM

Re: Removing last TRs in only one run

emarler August 19, 2019 05:30PM

Re: Removing last TRs in only one run

rick reynolds August 26, 2019 02:13PM