Hello!
Sadly, I am still getting this error. I've done everything from the previous thread we talked about--thoughts? It also says I don't have permission to update. See below! I also, thought I hadn't downloaded suma but I did so you can ignore that portion!
spower48@node37 ~]$ module load apps/afni-19.2.04
[spower48@node37 ~]$ afni
Precompiled binary linux_openmp_64: Jul 19 2019 (Version AFNI_19.2.04 'Claudius')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to SJ Li for much encouragement
Initializing: X11Error: Can't open display:
++ AFNI is detached from terminal.
[spower48@node37 ~]$ ^C
[spower48@node37 ~]$
[spower48@node37 ~]$ afni
Precompiled binary linux_openmp_64: Jul 19 2019 (Version AFNI_19.2.04 'Claudius')
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to KM Donahue for useful feedback
Initializing: X11Error: Can't open display:
++ AFNI is detached from terminal.
[spower48@node37 ~]$ afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit ELF
system: Linux
release: 3.10.0-1062.9.1.el7.x86_64
version: #1 SMP Mon Dec 2 08:31:54 EST 2019
distribution: Red Hat Enterprise Linux Server 7.7 Maipo
number of CPUs: 16
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /usr/local/afni/19.2.04/afni
afni version : Precompiled binary linux_openmp_64: Jul 19 2019
: AFNI_19.2.04 'Claudius'
AFNI_version.txt : AFNI_19.2.04, linux_openmp_64, Jul 19 2019
which python : /usr/bin/python
python version : 2.7.5
which R : /usr/local/R/3.6.1/bin/R
R version : R version 3.6.1 (2019-07-05) -- "Action of the Toes"
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/usr/local/afni/19.2.04/afni)
R : 1 (/usr/local/R/3.6.1/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.6)
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : success
checking for $HOME files...
.afnirc : found
.sumarc : missing
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib64/python2.7/site-packages/PyQt4
++ module loaded: PyQt4
-------------------------------- env vars --------------------------------
PATH = /usr/local/afni/19.2.04:/usr/local/R/3.6.1/bin:/usr/local/curl/7.64.1/bin:/usr/local/proj/6.0.0/bin:/usr/local/jags/4.3.0/bin:/usr/local/gdal/2.4.1/bin:/usr/local/geos/3.7.1/bin:/usr/local/udunits2/2.2.26/bin:/usr/local/gsl/2.5/bin:/usr/local/openmpi/4.0.1/ib-gcc8.3.0/bin:/usr/local/gcc/8.3.0/bin:/usr/local/Modules/3.2.10/bin:/opt/sge/bin:/opt/sge/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/spower48/.local/bin:/home/spower48/bin
PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH = /usr/local/afni/19.2.04:/usr/local/R/3.6.1/lib64:/usr/local/curl/7.64.1/lib:/usr/local/proj/6.0.0/lib:/usr/local/jags/4.3.0/lib:/usr/local/gdal/2.4.1/lib:/usr/local/geos/3.7.1/lib:/usr/local/udunits2/2.2.26/lib:/usr/local/gsl/2.5/lib:/usr/local/lapack/3.8.0/lib64:/usr/local/blas/3.8.0/lib:/usr/local/openmpi/4.0.1/ib-gcc8.3.0/lib:/usr/local/gcc/8.3.0/lib64:/opt2/amd-opencl/lib
DYLD_LIBRARY_PATH = :/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace:/opt/X11/lib/flat_namespace
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /usr/local/afni/19.2.04
------------------------------ OS specific -------------------------------
which yum : /usr/bin/yum
yum version : 3.4.3
========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate code examples from 'tcsh'
* please run: "suma -update_env" for .sumarc
* insufficient data for AFNI bootcamp
[spower48@node37 ~]$ suma -update_env
++ Notice suma (SUMA_suma.c:745 @10:12:54):
Environment update done.
[spower48@node37 ~]$ @update.afni.binaries -d
-- running @update.afni.binaries version 3.9, June 14, 2019
-- have AFNI binaries under /usr/local/afni/19.2.04
-- install dir: using existing /usr/local/afni/19.2.04
-- any downloads will be from [
afni.nimh.nih.gov] via wget
-- attempting to install package linux_openmp_64 under
install dir: /usr/local/afni/19.2.04...
-- have install dir
** you do not have write permissions in the install directory
(install dir = /usr/local/afni/19.2.04)
[spower48@node37 ~]$
