Attempting to use epi_b0_correct.py and it looks like it works well, however, I am unable to change the blurring parameter using the
-blur_sigma
command, as in:
epi_b0_correct.py -prefix corrected3 -in_freq phase_int2.nii.gz -in_epi cmrr_mbep2d_bold_84slices_1pt8mm_1600TR_MB3_R2.nii.gz -in_magn gre_field_mappingb_42slices_3pt6mm_e1.nii.gz -blur_sigma 6 -in_epi_json cmrr_mbep2d_bold_84slices_1pt8mm_1600TR_MB3_R2.json -epi_pe_dir AP -scale_freq 0.311785
Attempting this results in the following error
Traceback (most recent call last):
File "/Users/logan/abin/epi_b0_correct.py", line 74, in <module>
iopts = lb0.parse_args_b0_corr(sys.argv)
File "/Users/logan/abin/lib_b0_corr.py", line 1602, in parse_args_b0_corr
iopts.set_blurSigma(argv)
AttributeError: 'iopts_b0_corr' object has no attribute 'set_blurSigma'
I updated afni this morning, reporting
Precompiled binary macos_10.12_local: Aug 29 2019 (Version AFNI_19.2.21 'Claudius')
Everything works if I try not to set that parameter - thanks for working on this fieldmap approach!
