AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Colm Connolly
September 25, 2019 11:37AM
Hi,

Quick question about LABELs in afni_proc.py. If I pass the following arguments to afni_proc.py
-anat_follower_ROI aaseg  anat ${SumaDir}/aparc.a2009s+aseg.nii        \
             -anat_follower_ROI aeseg  epi  ${SumaDir}/aparc.a2009s+aseg.nii        \
             -anat_follower_ROI FSvent epi ${subject}_vent.nii                  \
             -anat_follower_ROI FSW    epi ${subject}_WM.nii                   \
             -anat_follower_erode FSvent FSW                           \

In a subsequent -regress_ROI argument, how do I refer to the eroded datasets by label name? Do I just tack an 'e' on the the labels supplied to -anat_follower_erode? So, in this case, FSvente and FSWe?

Thanks,

Colm.
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Subject Author Posted

LABELS in afni_proc.py

Colm Connolly September 25, 2019 11:37AM

Re: LABELS in afni_proc.py

ptaylor September 25, 2019 10:35PM