AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
September 30, 2019 06:29PM
I haven't heard of the 112 space, but we do have a couple tools that may be applicable. @animal_warper can be used to align the macaque subject brain to a template and also transform atlas datasets to the individual subject space. If you are doing most of the standard FMRI processing for task or resting state , then you can use the warps from @animal_warper as part of your input for afni_proc.py. These are described in the AFNI class documentation here, particularly the afni14 and afni15 presentations on alignment and atlases. There is also a demo you can install to see the results of both these tools with @Install_MACAQUE_DEMO. The README.txt file it installs provides more info.


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Converting NIMH macaque atlas files from D99 space (original space) to 112 atlas space

Nadira September 30, 2019 07:44AM

Re: Converting NIMH macaque atlas files from D99 space (original space) to 112 atlas space

Daniel Glen September 30, 2019 06:29PM