AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 06, 2019 10:26AM
Hi again,

I put those '*' according to the documentation of the 3dDeconvolve for the input of the stimulus timing (https://afni.nimh.nih.gov/pub/dist/doc/misc/Decon/DeconSummer2004.html). There, it is said that if you are using the multi-row format (for multiple runs), if there is only one stimulus time in the run (which often happens in my experimental design), you should put those '*' to not confuse AFNI with the single-column format. Maybe I misunderstood the instructions, but I tried erasing those extra '*', and the error is still there. Again, the error seems to happen only in those stim_time files that start with an empty run (the files where is a '*' in the first line). The ones that start with a stim time in the first run, beginning with a number in the first line, run smoothly. Any ideas of what is going on?

Alberto
Subject Author Posted

Problem with 3dLSS after 3dDeconvolve

asobrado October 01, 2019 05:33AM

Re: Problem with 3dLSS after 3dDeconvolve

gang October 01, 2019 04:38PM

Re: Problem with 3dLSS after 3dDeconvolve

asobrado October 04, 2019 11:55AM

Re: Problem with 3dLSS after 3dDeconvolve

gang October 04, 2019 04:30PM

Re: Problem with 3dLSS after 3dDeconvolve

asobrado October 06, 2019 10:26AM

Re: Problem with 3dLSS after 3dDeconvolve

rick reynolds October 07, 2019 05:07PM

Re: Problem with 3dLSS after 3dDeconvolve

asobrado October 08, 2019 04:48AM

Re: Problem with 3dLSS after 3dDeconvolve

rick reynolds October 08, 2019 09:15AM

Re: Problem with 3dLSS after 3dDeconvolve

asobrado October 08, 2019 09:50AM

Re: Problem with 3dLSS after 3dDeconvolve

tommorin November 07, 2019 01:20PM

Re: Problem with 3dLSS after 3dDeconvolve

gang November 07, 2019 05:21PM