AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 14, 2019 03:25PM
Hello!

Thank you for your patience! I'm sorry I didn't include all of the relevant info, but here is some additional information:

- We see this issue in all three of our subject groups: one is 28ish, the other is 40ish, and so the third total sample has around 68 subjects

- We are using 3dMVM

- I have attached the majority of one of our scripts below:
(Also note that we have identical scripts for other conditions that worked great and did not give us this rainbow confetti, hence our wanting to go through the Individual Level data from all the subjects for the conditions that look like this to see if any particular person has a messed up run)

# Specify the top-most directory associated with the study
set topdir = /data/projects/STUDIES/Social_Doors/Social_Doors_KIDS/fMRI_ANALYSES

# Specify the directory where subjects' neuroimaging data are located
set subjdata = $topdir/IndvlLvlAnalyses

# Specify the directory where the group analysis results will be written
set results = $topdir/GroupLvlAnalyses/3dMVM

cd $results

3dMVM 																											\
 -prefix 3dMVM.FB.Doors.091719 																				    \
 -jobs 11																										\
 -wsVars 'Task*Outcome'																							\
 -num_glt 14																									\
-gltLabel 1 LoseGames 						-gltCode 1 'Task : +1*LoseGames'								    \
-gltLabel 2 LoseGames_Lose 					-gltCode 2 'Task : +1*LoseGames Outcome : +1*Lose'			        \
-gltLabel 3 LoseGames_Win 					-gltCode 3 'Task : +1*LoseGames Outcome : +1*Win'			        \
-gltLabel 4 LoseGames_Win.V.Lose				-gltCode 4 'Task : +1*LoseGames Outcome : +1*Win -1*Lose'	    \
-gltLabel 5 WinGames 							-gltCode 5 'Task : +1*WinGames'								    \
-gltLabel 6 WinGames_Lose 						-gltCode 6 'Task : +1*WinGames Outcome : +1*Lose'				\
-gltLabel 7 WinGames_Win 						-gltCode 7 'Task : +1*WinGames Outcome : +1*Win'				\
-gltLabel 8 WinGames_Win.V.Lose 				-gltCode 8 'Task : +1*WinGames Outcome : +1*Win -1*Lose'		\
-gltLabel 9 Lose 								-gltCode 9 'Outcome : +1*Lose'									\
-gltLabel 10 Win 								-gltCode 10 'Outcome : +1*Win'									\
-gltLabel 11 Win.V.Lose 						-gltCode 11 'Outcome : +1*Win -1*Lose'							\
-gltLabel 12 LoseGames.V.WinGames 			-gltCode 12 'Task : +1*LoseGames -1*WinGames'				        \
-gltLabel 13 LoseGamesWin.V.WinGamesWin		-gltCode 13 'Task : +1*LoseGames -1*WinGames Outcome : +1*Win'	    \
-gltLabel 14 LoseGamesLose.V.WinGamesLose	-gltCode 14 'Task : +1*LoseGames -1*WinGames Outcome :+1*Lose'	    \
-dataTable																										\
Subj         Task			Outcome		InputFile				     											\
s010        LoseGames	    Lose		$subjdata/s010/s010.results.doors.1mm/stats.s010+tlrc'[FB.LoseGames.Lose#0_Coef]'	    \
s010        LoseGames	    Win			$subjdata/s010/s010.results.doors.1mm/stats.s010+tlrc'[FB.LoseGames.Win#0_Coef]'		\
s010        WinGames		Lose		$subjdata/s010/s010.results.doors.1mm/stats.s010+tlrc'[FB.WinGames.Lose#0_Coef]'		\
s010        WinGames		Win			$subjdata/s010/s010.results.doors.1mm/stats.s010+tlrc'[FB.WinGames.Win#0_Coef]'		    \

#continued for all participants 

s5140        LoseGames	    Lose	    $subjdata/s5140/s5140.results.doors.1mm/stats.s5140+tlrc'[FB.LoseGames.Lose#0_Coef]'	\
s5140        LoseGames	    Win	        $subjdata/s5140/s5140.results.doors.1mm/stats.s5140+tlrc'[FB.LoseGames.Win#0_Coef]'	    \
s5140        WinGames		Lose	    $subjdata/s5140/s5140.results.doors.1mm/stats.s5140+tlrc'[FB.WinGames.Lose#0_Coef]'     \
s5140        WinGames		Win	        $subjdata/s5140/s5140.results.doors.1mm/stats.s5140+tlrc'[FB.WinGames.Win#0_Coef]'

tar -cvzf $results/*.BRIK

Let me know what else you need from me!
Subject Author Posted

Group level analyses trouble-shooting Attachments

crjohnston October 10, 2019 05:36PM

Re: Group level analyses trouble-shooting

ptaylor October 10, 2019 06:30PM

Re: Group level analyses trouble-shooting

crjohnston October 14, 2019 03:25PM