AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 22, 2019 02:13PM
Hey Z,

Note that Daniel has temporarily fled the country, so he might not reply until we can drag him back.

My ignorant take on this is that the NL transform would not need to be recomputed. But it is not the forward F:A->B transform that you could extract the xyz offsets from, but the inverse F^-1:B->A one (and then take the inverse (negatives) of those offsets).

The point is that the offset columns of F (in the forward direction) are essentially applied AFTER the rotational pieces. So in order to use 3drefit, you would have to rewrite F as a shift transform followed by the rotational one. That might mean computing F inverse, separating it as rotation and shift matrices, and then inverting those pieces. cat_matvec could probably be used for that.

Does that seem reasonable?

- rick
Subject Author Posted

3dNwarpApply ate my memory!

Ziad Saad October 11, 2019 07:19PM

Re: 3dNwarpApply ate my memory!

Daniel Glen October 15, 2019 11:44AM

Re: 3dNwarpApply ate my memory!

Ziad Saad October 21, 2019 10:34AM

Re: 3dNwarpApply ate my memory!

rick reynolds October 22, 2019 02:13PM

Re: 3dNwarpApply ate my memory!

Daniel Glen October 16, 2019 10:18PM

Re: 3dNwarpApply ate my memory!

Ziad Saad October 24, 2019 10:38AM