History of AFNI updates  

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October 31, 2019 03:29PM
Sorry! I must have misread your previous message. Here is the output.

As for the data size, I previously used 3dresample to change orientation, which changed the grid and thus file size. I didn't use it this time, and the whole folder size is about 7BG. FYI.

sungjin@SMHCAS211AL01:~/fMRI/CGE/265001.s1.results.v1$ ls -lh pb0*BRIK*
-rw-r--r-- 1 sungjin sungjin 50M Oct 26 12:44 pb00.265001.r01.tcat+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:44 pb00.265001.r02.tcat+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:44 pb00.265001.r03.tcat+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:44 pb00.265001.r04.tcat+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:44 pb00.265001.r05.tcat+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 50M Oct 26 12:44 pb00.265001.r06.tcat+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 50M Oct 26 12:45 pb01.265001.r01.tshift+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:45 pb01.265001.r02.tshift+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:45 pb01.265001.r03.tshift+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:45 pb01.265001.r04.tshift+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 42M Oct 26 12:45 pb01.265001.r05.tshift+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 50M Oct 26 12:45 pb01.265001.r06.tshift+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 99M Oct 26 12:45 pb02.265001.r01.despike+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 83M Oct 26 12:45 pb02.265001.r02.despike+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 83M Oct 26 12:45 pb02.265001.r03.despike+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 83M Oct 26 12:45 pb02.265001.r04.despike+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 83M Oct 26 12:45 pb02.265001.r05.despike+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 99M Oct 26 12:45 pb02.265001.r06.despike+orig.BRIK
-rw-r--r-- 1 sungjin sungjin 151M Oct 26 16:09 pb03.265001.r01.volreg+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 126M Oct 26 16:10 pb03.265001.r02.volreg+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 126M Oct 26 16:11 pb03.265001.r03.volreg+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 126M Oct 26 16:13 pb03.265001.r04.volreg+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 126M Oct 26 16:14 pb03.265001.r05.volreg+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 150M Oct 26 16:15 pb03.265001.r06.volreg+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 354M Oct 26 16:17 pb04.265001.r01.blur+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 295M Oct 26 16:18 pb04.265001.r02.blur+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 295M Oct 26 16:19 pb04.265001.r03.blur+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 295M Oct 26 16:20 pb04.265001.r04.blur+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 295M Oct 26 16:22 pb04.265001.r05.blur+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 354M Oct 26 16:23 pb04.265001.r06.blur+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 145M Oct 26 16:28 pb05.265001.r01.scale+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 121M Oct 26 16:30 pb05.265001.r02.scale+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 121M Oct 26 16:32 pb05.265001.r03.scale+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 121M Oct 26 16:34 pb05.265001.r04.scale+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 121M Oct 26 16:36 pb05.265001.r05.scale+tlrc.BRIK.gz
-rw-r--r-- 1 sungjin sungjin 145M Oct 26 16:39 pb05.265001.r06.scale+tlrc.BRIK.gz
sungjin@SMHCAS211AL01:~/fMRI/CGE/265001.s1.results.v1$ 3dinfo -n4 -datum -prefix pb05.*.r01.scale+tlrc.HEAD
193 229 193 180 float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float|float pb05.265001.r01.scale
sungjin@SMHCAS211AL01:~/fMRI/CGE/265001.s1.results.v1$ 3dinfo pb05.*.r01.scale+tlrc.HEAD | head -n 30
++ 3dinfo: AFNI version=AFNI_19.0.26 (Mar 20 2019) [64-bit]

Dataset File: pb05.265001.r01.scale+tlrc
Identifier Code: AFN_CLiLFuBLihjL1q0LTbCOPQ Creation Date: Sat Oct 26 16:26:53 2019
Template Space: MNI
Dataset Type: Echo Planar (-epan)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK
Storage Space: 6,141,615,120 (6.1 billion) bytes
Geometry String: "MATRIX(-1,0,0,96,0,-1,0,132,0,0,1,-78):193,229,193"
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Left-to-Right
second (y) = Posterior-to-Anterior
third (z) = Inferior-to-Superior [-orient LPI]
R-to-L extent: -96.000 [R] -to- 96.000 [L] -step- 1.000 mm [193 voxels]
A-to-P extent: -96.000 [A] -to- 132.000 [P] -step- 1.000 mm [229 voxels]
I-to-S extent: -78.000 -to- 114.000 [S] -step- 1.000 mm [193 voxels]
Number of time steps = 180 Time step = 2.00000s Origin = 0.00000s
-- At sub-brick #0 '#0' datum type is float: 0 to 138.931
-- At sub-brick #1 '#1' datum type is float: 0 to 160.561
-- At sub-brick #2 '#2' datum type is float: 0 to 147.413
** For info on all 180 sub-bricks, use '3dinfo -verb' **

----- HISTORY -----
[sungjin@SMHCAS211AL01: Sat Oct 26 16:26:53 2019] ===================================
[sungjin@SMHCAS211AL01: Sat Oct 26 16:26:53 2019] === History of inputs to 3dcalc ===
[sungjin@SMHCAS211AL01: Sat Oct 26 16:26:53 2019] === Input a:
[sungjin@SMHCAS211AL01: Sat Oct 26 16:26:53 2019] [sungjin@SMHCAS211AL01: Sat Oct 26 16:08:14 2019] ===================================
[sungjin@SMHCAS211AL01: Sat Oct 26 16:08:14 2019] === History of inputs to 3dcalc ===
[sungjin@SMHCAS211AL01: Sat Oct 26 16:08:14 2019] === Input a:

Fatal Signal 13 (SIGPIPE) received
3dinfo main
Bottom of Debug Stack
** AFNI version = AFNI_19.0.26 Compile date = Mar 20 2019
** [[Precompiled binary linux_ubuntu_16_64: Mar 20 2019]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /home/sungjin/.afni.crashlog
sungjin@SMHCAS211AL01:~/fMRI/CGE/265001.s1.results.v1$ free -h
total used free shared buff/cache available
Mem: 15G 1.1G 7.7G 450M 6.8G 13G
Swap: 2.0G 780K 2.0G



Edited 2 time(s). Last edit at 10/31/2019 04:46PM by cooldesert.
Subject Author Posted

current memory mallocated error

cooldesert October 21, 2019 02:34PM

Re: current memory mallocated error

ptaylor October 21, 2019 05:04PM

Re: current memory mallocated error

cooldesert October 23, 2019 11:57AM

Re: current memory mallocated error

ptaylor October 23, 2019 12:37PM

Re: current memory mallocated error

cooldesert October 23, 2019 12:53PM

Re: current memory mallocated error

ptaylor October 23, 2019 01:00PM

Re: current memory mallocated error Attachments

cooldesert October 23, 2019 01:41PM

Re: current memory mallocated error

ptaylor October 23, 2019 03:22PM

Re: current memory mallocated error

rick reynolds October 23, 2019 03:24PM

Re: current memory mallocated error

cooldesert October 24, 2019 01:34PM

Re: current memory mallocated error

cooldesert October 26, 2019 05:11PM

Re: current memory mallocated error

rick reynolds October 28, 2019 09:57AM

Re: current memory mallocated error

cooldesert October 31, 2019 03:29PM

Re: current memory mallocated error

rick reynolds October 31, 2019 05:08PM

Re: current memory mallocated error Attachments

cooldesert November 01, 2019 04:35PM

Re: current memory mallocated error

rick reynolds November 14, 2019 09:48AM