AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 23, 2019 12:53PM
Hello,

I am attempting to include a voxel-wise covariate (a nifti file showing the grey matter probability maps from VBM analysis) in my 3dMVM script see below, but I keep getting this error and I am not sure what this pertains to. Any help or suggestions is much appreciated!

Error in dim(vQV) <- c(dimx, dimy, dimz, length(unique(lop$dataStr[, lop$vQV[1]]))) :
dims [product 42024960] do not match the length of object [351351000]
Execution halted

All the best,
Klad


3dMVM -prefix Fed_VBM -jobs 4 \
-bsVars group \
-wsVars "phase*reinf" \
-vVars VBM \
-SS_type 3 \
-num_glt 19 \
-gltLabel 1 3way_inter -gltCode 1 'group : 1*pat -1*ctrl phase : 1*acq -1*rev reinf : 1*corr -1*incor' \
-gltLabel 2 group_phase -gltCode 2 'group : 1*pat -1*ctrl phase : 1*acq -1*rev' \
-gltLabel 3 group_reinf -gltCode 3 'group : 1*pat -1*ctrl reinf : 1*corr -1*incor' \
-gltLabel 4 phase_reinf -gltCode 4 'phase : 1*acq -1*rev reinf : 1*corr -1*incor' \
-gltLabel 5 group -gltCode 5 'group : 1*pat -1*ctrl' \
-gltLabel 6 phase -gltCode 6 'phase : 1*acq -1*rev' \
-gltLabel 7 reinf -gltCode 7 'reinf : 1*corr -1*incor' \
-gltLabel 8 acq_group -gltCode 8 'phase : 1*acq group : 1*pat -1*ctrl' \
-gltLabel 9 rev_group -gltCode 9 'phase : 1*rev group : 1*pat -1*ctrl' \
-gltLabel 10 corr_group -gltCode 10 'reinf : 1*corr group : 1*pat -1*ctrl' \
-gltLabel 11 incor_group -gltCode 11 'reinf : 1*incor group : 1*pat -1*ctrl' \
-gltLabel 12 acq_reinf -gltCode 12 'phase : 1*acq reinf : 1*corr -1*incor' \
-gltLabel 13 rev_reinf -gltCode 13 'phase : 1*rev reinf : 1*corr -1*incor' \
-gltLabel 14 corr_phase -gltCode 14 'reinf : 1*corr phase: 1*acq -1*rev' \
-gltLabel 15 incor_phase -gltCode 15 'reinf : 1*incor phase : 1*acq -1*rev' \
-gltLabel 16 group_acq_corr -gltCode 16 'group : 1*pat -1*ctrl phase : 1*acq reinf : 1*corr' \
-gltLabel 17 group_acq_incor -gltCode 17 'group : 1*pat -1*ctrl phase : 1*acq reinf : 1*incor' \
-gltLabel 18 group_rev_corr -gltCode 18 'group : 1*pat -1*ctrl phase : 1*rev reinf : 1*corr' \
-gltLabel 19 group_rev_incor -gltCode 19 'group : 1*pat -1*ctrl phase : 1*rev reinf : 1*incor' \
-dataTable \
Subj group phase reinf VBM InputFile \
6292 pat acq corr 6292/smwc16292.nii 6292/Proc_FIRST_3RUNS_6292_April2019.results/6292_RevP_acq_corr_fed+tlrc \
6292 pat acq incor 6292/smwc16292.nii 6292/Proc_FIRST_3RUNS_6292_April2019.results/6292_RevP_acq_incor_fed+tlrc \
6292 pat rev corr 6292/smwc16292.nii 6292/Proc_FIRST_3RUNS_6292_April2019.results/6292_RevP_rev_corr_fed+tlrc \
.....
......
.....
....
.
Subject Author Posted

Including a voxel wise covaraite in 3dMVM

klad October 23, 2019 12:53PM

Re: Including a voxel wise covaraite in 3dMVM

gang October 24, 2019 11:23AM

Re: Including a voxel wise covaraite in 3dMVM

klad October 28, 2019 10:00AM

Re: Including a voxel wise covaraite in 3dMVM

gang October 28, 2019 01:18PM

Re: Including a voxel wise covaraite in 3dMVM

klad October 28, 2019 01:35PM

Re: Including a voxel wise covaraite in 3dMVM

gang October 29, 2019 01:07PM

Re: Including a voxel wise covaraite in 3dMVM

klad October 29, 2019 04:53PM

Re: Including a voxel wise covaraite in 3dMVM

Daniel Glen October 31, 2019 04:44PM

Re: Including a voxel wise covaraite in 3dMVM

klad November 22, 2019 11:00AM