afni.nimh.nih.gov

Hi,
I have followed the installation guide for Ubuntu 18.04, however, four libraries continue to be missing "afex", "phia", "brms", and "metafor". I see from the message board history that user alfarmer8 had the same issue a couple of months ago, and I'm wondering whether a solution was found. Thank you, and happy new year!

-------------------------------- general ---------------------------------
architecture: 64bit
system: Linux
release: 5.0.0-37-generic
version: #40~18.04.1-Ubuntu SMP Thu Nov 14 12:06:39 UTC 2019
distribution: elementary 5.1 hera
number of CPUs: 8
apparent login shell: bash
shell RC file: .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /home/pereanez/abin/afni
afni version : Precompiled binary linux_ubuntu_16_64: Dec 27 2019
: AFNI_19.3.18 'Nero'
AFNI_version.txt : AFNI_19.3.18, linux_ubuntu_16_64, Dec 27 2019
which python : /usr/bin/python
python version : 2.7.15+
which R : /usr/bin/R
R version : R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night"
which tcsh : /usr/bin/tcsh

instances of various programs found in PATH:
afni : 1 (/home/pereanez/abin/afni)
R : 1 (/usr/bin/R)
python : 1 (/usr/bin/python2.7)
python2 : 1 (/usr/bin/python2.7)
python3 : 1 (/usr/bin/python3.6)


testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
3dMVM : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE

oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!
These packages are not installed on the computer: brms!
These packages are not installed on the computer: metafor!


R RHOME : /usr/lib/R

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module loaded: PyQt4
module file : /usr/lib/python2.7/dist-packages/PyQt4/__init__.pyc

** failed to load module matplotlib.pyplot
-- matplotlib.pyplot is not required, but is desirable

-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/pereanez/abin

PYTHONPATH =
R_LIBS = /home/pereanez/R

LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME
top history: ...2019 [ptaylor]: updated FT_analysis/results.QC_FT.05
data dir : found AFNI_demos under $HOME
top history: 22 Oct 2019 [discoraj]: added Cluster Explorer Demo
data dir : found suma_demo under $HOME
top history: ...s_New/data/Build_tmp on Mon Mar 4 11:56:45 EST 2013
data dir : found afni_handouts under $HOME
atlas : found TT_N27+tlrc under /home/pereanez/abin

------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.6.12 (amd64)


========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate code examples from 'tcsh'
* shell bash: consider sourcing (non-login) .bashrc from (login) .profile
* missing R packages (see rPkgsInstall)